Setup and Installation

Dependencies

IS2view is dependent on several open source programs that can be installed using OS-specific package management systems (e.g. apt or homebrew), conda or from source:

Installation

IS2view is available for download from the GitHub repository, the Python Package Index (pypi), and from conda-forge.

The simplest installation for most users will likely be using conda or mamba:

conda install -c conda-forge is2view

conda installed versions of IS2view can be upgraded to the latest stable release:

conda update is2view

Development Install

To use the development repository, please fork IS2view into your own account and then clone onto your system:

git clone https://github.com/tsutterley/IS2view.git

IS2view can then be installed within the package directory using pip:

python3 -m pip install --user .

To include all optional dependencies:

python3 -m pip install --user .[all]

The development version of IS2view can also be installed directly from GitHub using pip:

python3 -m pip install --user git+https://github.com/tsutterley/IS2view.git

Package Management with `pixi`

Alternatively pixi can be used to create a streamlined environment after cloning the repository:

pixi install

pixi maintains isolated environments for each project, allowing for different versions of IS2view and its dependencies to be used without conflict. The pixi.lock file within the repository defines the required packages and versions for the environment.

pixi can also create shells for running programs within the environment:

pixi shell

To see the available tasks within the IS2view workspace:

pixi task list

Tasks that can run on this machine:
-----------------------------------
clean-docs (by design), coverage (by design), docs (by design), export-env (by design), lint (by design), start (by design)
Task        Description
clean-docs  Remove build artifacts and rebuild the documentation with sphinx
coverage    Run the pytest suite and create coverage reports
docs        Create documentation with sphinx
export-env  Export workspace to a conda environment file
lint        Run flake8 to check for compilation errors
start       Start JupyterLab in the notebooks directory

Note

pixi is under active development and may change in future releases

Verifying Installation

import IS2view

print(f"IS2view version: {IS2view.__version__}")

IS2view version: 0.1.1